IL_8PHJ_164

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_164 not in the Motif Atlas

Homologous match to IL_5J7L_347

Geometric discrepancy: 0.1018

The information below is about IL_5J7L_347

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

8PHJ|1|a|U|2680
8PHJ|1|a|C|2681
8PHJ|1|a|A|2682
8PHJ|1|a|C|2683
8PHJ|1|a|U|2684
*
8PHJ|1|a|A|2725
8PHJ|1|a|A|2726
8PHJ|1|a|A|2727

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14

Chain o

Large ribosomal subunit protein bL19