IL_8PHJ_165

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8PHJ|1|a|U|2689, 8PHJ|1|a|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_165 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0838

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8PHJ|1|a|U|2687
8PHJ|1|a|G|2688
8PHJ|1|a|U|2689
8PHJ|1|a|U|2690
8PHJ|1|a|C|2691
*
8PHJ|1|a|G|2718
8PHJ|1|a|G|2719
8PHJ|1|a|U|2720
8PHJ|1|a|A|2721
8PHJ|1|a|G|2722

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain o

Large ribosomal subunit protein bL19