IL_8PHJ_191
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CCUUGAUGUGUAGGAUAG*CCUUUAAUG
- Length
- 27 nucleotides
- Bulged bases
- 8PHJ|1|a|U|2111, 8PHJ|1|a|A|2114, 8PHJ|1|a|G|2116, 8PHJ|1|a|U|2118, 8PHJ|1|a|A|2119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PHJ_191 not in the Motif Atlas
- Homologous match to IL_5J7L_397
- Geometric discrepancy: 0.1446
- The information below is about IL_5J7L_397
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54737.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
8PHJ|1|a|C|2103
8PHJ|1|a|C|2104
8PHJ|1|a|U|2105
8PHJ|1|a|U|2106
8PHJ|1|a|G|2107
8PHJ|1|a|A|2108
8PHJ|1|a|U|2109
8PHJ|1|a|G|2110
8PHJ|1|a|U|2111
8PHJ|1|a|G|2112
8PHJ|1|a|U|2113
8PHJ|1|a|A|2114
8PHJ|1|a|G|2115
8PHJ|1|a|G|2116
8PHJ|1|a|A|2117
8PHJ|1|a|U|2118
8PHJ|1|a|A|2119
8PHJ|1|a|G|2120
*
8PHJ|1|a|C|2178
8PHJ|1|a|C|2179
8PHJ|1|a|U|2180
8PHJ|1|a|U|2181
8PHJ|1|a|U|2182
8PHJ|1|a|A|2183
8PHJ|1|a|A|2184
8PHJ|1|a|U|2185
8PHJ|1|a|G|2186
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain 8
- Transfer RNA; tRNA
Coloring options: