IL_8PJ1_067
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8PJ1|1|A|C|1215, 8PJ1|1|A|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_067 not in the Motif Atlas
- Homologous match to IL_8C3A_449
- Geometric discrepancy: 0.1024
- The information below is about IL_8C3A_449
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.10
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 16
Unit IDs
8PJ1|1|A|A|1214
8PJ1|1|A|C|1215
8PJ1|1|A|C|1216
8PJ1|1|A|A|1217
*
8PJ1|1|A|U|1681
8PJ1|1|A|C|1682
8PJ1|1|A|C|1683
8PJ1|1|A|C|1684
8PJ1|1|A|U|1685
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain Y
- 40S ribosomal protein S16
- Chain h
- 40S ribosomal protein S20
- Chain n
- 40S ribosomal protein S28
- Chain w
- Transfer RNA; tRNA
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