IL_8PJ1_082

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

8PJ1|1|A|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ1_082 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2391

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8PJ1|1|A|U|1408
8PJ1|1|A|A|1409
*
8PJ1|1|A|U|1432
8PJ1|1|A|C|1433
8PJ1|1|A|C|1434
8PJ1|1|A|C|1435
8PJ1|1|A|C|1436
8PJ1|1|A|C|1437
8PJ1|1|A|A|1438

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain h

40S ribosomal protein S20