IL_8PJ1_091

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

8PJ1|1|A|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|C|1708
8PJ1|1|A|G|1709
8PJ1|1|A|C|1710
8PJ1|1|A|U|1711
*
8PJ1|1|A|A|1822
8PJ1|1|A|A|1823
8PJ1|1|A|A|1824
8PJ1|1|A|A|1825
8PJ1|1|A|G|1826

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain 9

60S ribosomal protein L41

Chain E

40S ribosomal protein S23

Chain p

Eukaryotic translation initiation factor 1

Chain q

Eukaryotic translation initiation factor 1A, X-chromosomal