IL_8PJ2_069
3D structure
- PDB id
- 8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ2_069 not in the Motif Atlas
- Homologous match to IL_8C3A_452
- Geometric discrepancy: 0.1235
- The information below is about IL_8C3A_452
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8PJ2|1|A|G|1270
8PJ2|1|A|C|1271
8PJ2|1|A|C|1272
*
8PJ2|1|A|G|1510
8PJ2|1|A|U|1511
8PJ2|1|A|C|1512
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain a
- 40S ribosomal protein S10
- Chain b
- 40S ribosomal protein S15
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin
Coloring options: