IL_8PJ4_018
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUU*ACCUCGGG
- Length
- 12 nucleotides
- Bulged bases
- 8PJ4|1|A|U|305, 8PJ4|1|A|G|307
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ4_018 not in the Motif Atlas
- Geometric match to IL_1GID_008
- Geometric discrepancy: 0.391
- The information below is about IL_1GID_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 36
Unit IDs
8PJ4|1|A|C|216
8PJ4|1|A|A|217
8PJ4|1|A|U|218
8PJ4|1|A|U|219
*
8PJ4|1|A|A|302
8PJ4|1|A|C|303
8PJ4|1|A|C|304
8PJ4|1|A|U|305
8PJ4|1|A|C|306
8PJ4|1|A|G|307
8PJ4|1|A|G|308
8PJ4|1|A|G|309
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain R
- 40S ribosomal protein S8
Coloring options: