IL_8PJ5_018

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8PJ5|1|A|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ5_018 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3973

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8PJ5|1|A|C|216
8PJ5|1|A|A|217
8PJ5|1|A|U|218
8PJ5|1|A|U|219
*
8PJ5|1|A|A|302
8PJ5|1|A|C|303
8PJ5|1|A|C|304
8PJ5|1|A|U|305
8PJ5|1|A|C|306
8PJ5|1|A|G|307
8PJ5|1|A|G|308
8PJ5|1|A|G|309

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8