IL_8PJ6_018

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8PJ6|1|A|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_018 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3882

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8PJ6|1|A|C|216
8PJ6|1|A|A|217
8PJ6|1|A|U|218
8PJ6|1|A|U|219
*
8PJ6|1|A|A|302
8PJ6|1|A|C|303
8PJ6|1|A|C|304
8PJ6|1|A|U|305
8PJ6|1|A|C|306
8PJ6|1|A|G|307
8PJ6|1|A|G|308
8PJ6|1|A|G|309

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8