IL_8PJ6_055

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ6_055 not in the Motif Atlas

Homologous match to IL_8C3A_441

Geometric discrepancy: 0.1187

The information below is about IL_8C3A_441

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22198.1

Basepair signature

cWW-tSH-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8PJ6|1|A|A|1042
8PJ6|1|A|G|1043
8PJ6|1|A|G|1044
8PJ6|1|A|U|1045
8PJ6|1|A|U|1046
8PJ6|1|A|C|1047
*
8PJ6|1|A|G|1071
8PJ6|1|A|U|1072
8PJ6|1|A|U|1073

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S14

Chain Q

40S ribosomal protein S26