IL_8PK0_042
3D structure
- PDB id
- 8PK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CCCUGUAC*GGACAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PK0_042 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.3156
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8PK0|1|A|C|3150
8PK0|1|A|C|3151
8PK0|1|A|C|3152
8PK0|1|A|U|3153
8PK0|1|A|G|3154
8PK0|1|A|U|3155
8PK0|1|A|A|3156
8PK0|1|A|C|3157
*
8PK0|1|A|G|3162
8PK0|1|A|G|3163
8PK0|1|A|A|3164
8PK0|1|A|C|3165
8PK0|1|A|A|3166
8PK0|1|A|A|3167
8PK0|1|A|G|3168
Current chains
- Chain A
- 16S rRNA + pre-H68-71 segment
Nearby chains
- Chain L
- 39S ribosomal protein L14, mitochondrial
- Chain t
- GTP-binding protein 10
- Chain u
- Mitochondrial assembly of ribosomal large subunit protein 1
Coloring options: