IL_8PKL_016

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8PKL|1|7|G|801, 8PKL|1|7|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0772

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8PKL|1|7|G|674
8PKL|1|7|A|675
8PKL|1|7|A|676
8PKL|1|7|A|677
8PKL|1|7|C|678
*
8PKL|1|7|G|799
8PKL|1|7|A|800
8PKL|1|7|G|801
8PKL|1|7|A|802
8PKL|1|7|U|803
8PKL|1|7|A|804
8PKL|1|7|G|805
8PKL|1|7|C|806

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain o

50S ribosomal protein L15