IL_8PKL_085

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_085 not in the Motif Atlas

Geometric match to IL_4K27_002

Geometric discrepancy: 0.331

The information below is about IL_4K27_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8PKL|1|7|G|2107
8PKL|1|7|A|2108
8PKL|1|7|U|2109
8PKL|1|7|G|2110
*
8PKL|1|7|C|2179
8PKL|1|7|U|2180
8PKL|1|7|U|2181
8PKL|1|7|U|2182

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain a

Large ribosomal subunit protein uL1