IL_8PKL_094

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_094 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.177

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8PKL|1|7|A|2459
8PKL|1|7|U|2460
8PKL|1|7|A|2461
*
8PKL|1|7|U|2489
8PKL|1|7|G|2490
8PKL|1|7|U|2491
8PKL|1|7|U|2492
8PKL|1|7|U|2493

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain h

50S ribosomal protein L16

Chain z

50S ribosomal protein L27