IL_8PKL_130

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8PKL|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_130 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1438

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8PKL|1|A|G|147
8PKL|1|A|G|148
8PKL|1|A|A|149
8PKL|1|A|U|150
8PKL|1|A|A|151
8PKL|1|A|A|152
8PKL|1|A|C|153
*
8PKL|1|A|G|168
8PKL|1|A|C|169
8PKL|1|A|U|170
8PKL|1|A|A|171
8PKL|1|A|A|172
8PKL|1|A|U|173
8PKL|1|A|A|174
8PKL|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20