IL_8PKL_170

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

8PKL|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_170 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1496

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8PKL|1|A|G|1124
8PKL|1|A|U|1125
8PKL|1|A|U|1126
8PKL|1|A|G|1127
8PKL|1|A|C|1128
*
8PKL|1|A|G|1144
8PKL|1|A|A|1145
8PKL|1|A|A|1146
8PKL|1|A|C|1147
8PKL|1|A|U|1148
8PKL|1|A|C|1149

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

30S ribosomal protein S10