3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGACGAAG*UCGAA
Length
13 nucleotides
Bulged bases
8PNN|1|1|C|1391
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PNN_058 not in the Motif Atlas
Homologous match to IL_8P9A_287
Geometric discrepancy: 0.0536
The information below is about IL_8P9A_287
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8PNN|1|1|U|1388
8PNN|1|1|G|1389
8PNN|1|1|A|1390
8PNN|1|1|C|1391
8PNN|1|1|G|1392
8PNN|1|1|A|1393
8PNN|1|1|A|1394
8PNN|1|1|G|1395
*
8PNN|1|1|U|1415
8PNN|1|1|C|1416
8PNN|1|1|G|1417
8PNN|1|1|A|1418
8PNN|1|1|A|1419

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain 9
60S ribosomal protein L26-A
Chain AF
60S ribosomal protein L32
Chain l
60S ribosomal protein L4-A
Chain n
60S ribosomal protein L6-A
Chain x
60S ribosomal protein L17-A

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