IL_8PNN_066

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8PNN|1|1|U|1629, 8PNN|1|1|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_066 not in the Motif Atlas

Homologous match to IL_8CRE_071

Geometric discrepancy: 0.2034

The information below is about IL_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56317.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8PNN|1|1|U|1627
8PNN|1|1|C|1628
8PNN|1|1|U|1629
8PNN|1|1|U|1630
8PNN|1|1|C|1631
*
8PNN|1|1|G|1811
8PNN|1|1|G|1812
8PNN|1|1|A|1813
8PNN|1|1|A|1814
8PNN|1|1|U|1815
8PNN|1|1|A|1816

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L27-A