IL_8PNN_174
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_174 not in the Motif Atlas
- Homologous match to IL_8P9A_402
- Geometric discrepancy: 0.1125
- The information below is about IL_8P9A_402
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8PNN|1|A|A|550
8PNN|1|A|G|551
8PNN|1|A|G|552
8PNN|1|A|G|553
8PNN|1|A|C|554
8PNN|1|A|A|555
8PNN|1|A|A|556
8PNN|1|A|G|557
*
8PNN|1|A|C|587
8PNN|1|A|U|588
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain K
- 40S ribosomal protein S9-A
- Chain f
- 40S ribosomal protein S30-A
- Chain i
- Suppressor protein STM1
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