IL_8PNN_186

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_186 not in the Motif Atlas

Geometric match to IL_8P9A_417

Geometric discrepancy: 0.1125

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8PNN|1|A|A|865
8PNN|1|A|G|866
*
8PNN|1|A|C|962
8PNN|1|A|A|963
8PNN|1|A|U|964
8PNN|1|A|U|965

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S13

Chain X

40S ribosomal protein S22-A

Chain c

40S ribosomal protein S27-A