IL_8PNN_193

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_193 not in the Motif Atlas

Homologous match to IL_8P9A_424

Geometric discrepancy: 0.1541

The information below is about IL_8P9A_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8PNN|1|A|C|990
8PNN|1|A|G|991
8PNN|1|A|A|992
8PNN|1|A|A|993
8PNN|1|A|G|994
*
8PNN|1|A|C|1010
8PNN|1|A|G|1011
8PNN|1|A|U|1012
8PNN|1|A|A|1013
8PNN|1|A|G|1014

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain P

40S ribosomal protein S14-B

Chain b

Small ribosomal subunit protein eS26B

Chain j

60S ribosomal protein L2-A