IL_8PNN_220
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8PNN|1|A|U|1514, 8PNN|1|A|A|1516, 8PNN|1|A|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PNN_220 not in the Motif Atlas
- Homologous match to IL_8P9A_449
- Geometric discrepancy: 0.3257
- The information below is about IL_8P9A_449
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|A|G|1488
8PNN|1|A|U|1489
8PNN|1|A|C|1490
8PNN|1|A|U|1491
8PNN|1|A|A|1492
8PNN|1|A|A|1493
8PNN|1|A|C|1494
*
8PNN|1|A|G|1513
8PNN|1|A|U|1514
8PNN|1|A|A|1515
8PNN|1|A|A|1516
8PNN|1|A|U|1517
8PNN|1|A|C|1518
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS3
- Chain U
- 40S ribosomal protein S19-A
- Chain V
- Small ribosomal subunit protein uS10
- Chain e
- Small ribosomal subunit protein uS14A
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