IL_8PNN_223

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8PNN|1|A|C|1637, 8PNN|1|A|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_223 not in the Motif Atlas

Homologous match to IL_8CRE_466

Geometric discrepancy: 0.1122

The information below is about IL_8CRE_466

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8PNN|1|A|C|1636
8PNN|1|A|C|1637
8PNN|1|A|G|1638
*
8PNN|1|A|C|1764
8PNN|1|A|A|1765
8PNN|1|A|A|1766
8PNN|1|A|G|1767

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S14-B

Chain b

Small ribosomal subunit protein eS26B

Chain i

Suppressor protein STM1