IL_8PNN_287

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8PNN|1|AR|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_287 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.0913

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8PNN|1|AR|G|1234
8PNN|1|AR|U|1235
8PNN|1|AR|G|1236
8PNN|1|AR|G|1237
8PNN|1|AR|C|1238
*
8PNN|1|AR|G|1250
8PNN|1|AR|A|1251
8PNN|1|AR|A|1252
8PNN|1|AR|U|1253
8PNN|1|AR|C|1254

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain p0

Large ribosomal subunit protein uL10