IL_8PNN_353

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CACAC*GCGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_353 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.0646

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8PNN|1|AR|C|3162
8PNN|1|AR|A|3163
8PNN|1|AR|C|3164
8PNN|1|AR|A|3165
8PNN|1|AR|C|3166
*
8PNN|1|AR|G|3284
8PNN|1|AR|C|3285
8PNN|1|AR|G|3286
8PNN|1|AR|U|3287
8PNN|1|AR|G|3288

Current chains

Chain AR

25S ribosomal RNA

Nearby chains