IL_8PNN_368

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

8PNN|1|AR|U|3354, 8PNN|1|AR|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_368 not in the Motif Atlas

Homologous match to IL_8CRE_142

Geometric discrepancy: 0.1589

The information below is about IL_8CRE_142

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8PNN|1|AR|C|3349
8PNN|1|AR|C|3350
*
8PNN|1|AR|G|3353
8PNN|1|AR|U|3354
8PNN|1|AR|U|3355
8PNN|1|AR|G|3356

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CW

60S ribosomal protein L22-A

Chain s8

40S ribosomal protein S8-A