IL_8PNN_397

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8PNN|1|sR|U|313, 8PNN|1|sR|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_397 not in the Motif Atlas

Homologous match to IL_8P9A_391

Geometric discrepancy: 0.035

The information below is about IL_8P9A_391

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8PNN|1|sR|U|311
8PNN|1|sR|A|312
8PNN|1|sR|U|313
8PNN|1|sR|C|314
8PNN|1|sR|A|315
8PNN|1|sR|A|316
*
8PNN|1|sR|U|348
8PNN|1|sR|U|349
8PNN|1|sR|U|350
8PNN|1|sR|C|351
8PNN|1|sR|A|352
8PNN|1|sR|A|353
8PNN|1|sR|C|354
8PNN|1|sR|G|355

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain d3

40S ribosomal protein S23-A

Chain s8

40S ribosomal protein S8-A