IL_8PNN_433

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PNN_433 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.0476

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8PNN|1|sR|G|1111
8PNN|1|sR|G|1112
8PNN|1|sR|A|1113
8PNN|1|sR|G|1114
8PNN|1|sR|U|1115
8PNN|1|sR|A|1116
8PNN|1|sR|U|1117
8PNN|1|sR|G|1118
*
8PNN|1|sR|U|1129
8PNN|1|sR|G|1130
8PNN|1|sR|A|1131
8PNN|1|sR|A|1132
8PNN|1|sR|A|1133
8PNN|1|sR|C|1134

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DP

Large ribosomal subunit protein eL41B

Chain d3

40S ribosomal protein S23-A