IL_8PPK_011

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

8PPK|1|2|G|113, 8PPK|1|2|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_011 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1573

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8PPK|1|2|U|112
8PPK|1|2|G|113
8PPK|1|2|G|114
8PPK|1|2|U|115
*
8PPK|1|2|A|348
8PPK|1|2|A|349

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11