IL_8PPK_098

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUUA*U(OMU)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPK_098 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.226

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8PPK|1|2|U|1728
8PPK|1|2|U|1729
8PPK|1|2|U|1730
8PPK|1|2|A|1731
*
8PPK|1|2|U|1803
8PPK|1|2|OMU|1804
8PPK|1|2|G|1805
8PPK|1|2|A|1806

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S8