IL_8PPK_122
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8PPK|1|2|G|1285
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPK_122 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2687
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PPK|1|2|G|1281
8PPK|1|2|A|1282
8PPK|1|2|C|1283
8PPK|1|2|A|1284
8PPK|1|2|G|1285
8PPK|1|2|G|1286
8PPK|1|2|A|1287
8PPK|1|2|OMU|1288
8PPK|1|2|U|1289
8PPK|1|2|G|1290
*
8PPK|1|2|C|1309
8PPK|1|2|U|1310
8PPK|1|2|C|1311
8PPK|1|2|G|1312
8PPK|1|2|A|1313
8PPK|1|2|U|1314
8PPK|1|2|U|1315
8PPK|1|2|C|1316
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain K
- 40S ribosomal protein S10
- Chain M
- 40S ribosomal protein S12
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
Coloring options: