IL_8PPL_033
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GUGCCAG*CGG(OMU)AAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8PPL|1|A2|A|628
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_033 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.167
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PPL|1|A2|G|611
8PPL|1|A2|U|612
8PPL|1|A2|G|613
8PPL|1|A2|C|614
8PPL|1|A2|C|615
8PPL|1|A2|A|616
8PPL|1|A2|G|617
*
8PPL|1|A2|C|624
8PPL|1|A2|G|625
8PPL|1|A2|G|626
8PPL|1|A2|OMU|627
8PPL|1|A2|A|628
8PPL|1|A2|A|629
8PPL|1|A2|U|630
8PPL|1|A2|U|631
8PPL|1|A2|C|632
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AX
- 40S ribosomal protein S23
- Chain Ae
- Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
- Chain Aj
- Host translation inhibitor nsp1
- Chain Iq
- Eukaryotic translation initiation factor 1A, X-chromosomal
Coloring options: