IL_8PPL_051
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 8PPL|1|A2|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_051 not in the Motif Atlas
- Geometric match to IL_4V88_431
- Geometric discrepancy: 0.111
- The information below is about IL_4V88_431
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8PPL|1|A2|C|931
8PPL|1|A2|G|932
8PPL|1|A2|G|933
8PPL|1|A2|G|934
8PPL|1|A2|G|935
*
8PPL|1|A2|C|1007
8PPL|1|A2|A|1008
8PPL|1|A2|A|1009
8PPL|1|A2|G|1010
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AB
- 40S ribosomal protein S3a
- Chain AN
- 40S ribosomal protein S13
- Chain Aa
- 40S ribosomal protein S26
- Chain Iy
- Eukaryotic translation initiation factor 3 subunit C
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