IL_8PPL_052

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_052 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0789

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8PPL|1|A2|G|942
8PPL|1|A2|U|943
8PPL|1|A2|A|944
8PPL|1|A2|U|945
*
8PPL|1|A2|A|981
8PPL|1|A2|G|982
8PPL|1|A2|A|983
8PPL|1|A2|C|984

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AB

40S ribosomal protein S3a

Chain AO

40S ribosomal protein S14

Chain Iy

Eukaryotic translation initiation factor 3 subunit C