IL_8PPL_064
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 8PPL|1|A2|C|1215, 8PPL|1|A2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_064 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.0983
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
8PPL|1|A2|A|1214
8PPL|1|A2|C|1215
8PPL|1|A2|C|1216
8PPL|1|A2|A|1217
*
8PPL|1|A2|U|1681
8PPL|1|A2|C|1682
8PPL|1|A2|C|1683
8PPL|1|A2|C|1684
8PPL|1|A2|U|1685
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AQ
- 40S ribosomal protein S16
- Chain Ac
- 40S ribosomal protein S28
- Chain Iw
- Transfer RNA; tRNA
Coloring options: