IL_8PPL_073
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 8PPL|1|A2|U|1494, 8PPL|1|A2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_073 not in the Motif Atlas
- Geometric match to IL_4V88_451
- Geometric discrepancy: 0.1139
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8PPL|1|A2|U|1333
8PPL|1|A2|G|1334
8PPL|1|A2|G|1335
*
8PPL|1|A2|U|1492
8PPL|1|A2|C|1493
8PPL|1|A2|U|1494
8PPL|1|A2|G|1495
8PPL|1|A2|U|1496
8PPL|1|A2|G|1497
8PPL|1|A2|A|1498
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AK
- 40S ribosomal protein S10
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
- Chain Af
- Ubiquitin-40S ribosomal protein S27a
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