IL_8PPL_077
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CAUGCU*A(OMG)AGG
- Length
- 11 nucleotides
- Bulged bases
- 8PPL|1|A2|U|1397
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_077 not in the Motif Atlas
- Geometric match to IL_4WF9_084
- Geometric discrepancy: 0.3481
- The information below is about IL_4WF9_084
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
8PPL|1|A2|C|1395
8PPL|1|A2|A|1396
8PPL|1|A2|U|1397
8PPL|1|A2|G|1398
8PPL|1|A2|C|1399
8PPL|1|A2|U|1400
*
8PPL|1|A2|A|1446
8PPL|1|A2|OMG|1447
8PPL|1|A2|A|1448
8PPL|1|A2|G|1449
8PPL|1|A2|G|1450
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AQ
- 40S ribosomal protein S16
- Chain AR
- 40S ribosomal protein S17
- Chain AU
- 40S ribosomal protein S20
- Chain Ag
- Receptor of activated protein C kinase 1
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