IL_8PPL_084
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 8PPL|1|A2|A|1580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_084 not in the Motif Atlas
- Geometric match to IL_5J7L_055
- Geometric discrepancy: 0.195
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PPL|1|A2|G|1550
8PPL|1|A2|U|1551
8PPL|1|A2|G|1552
8PPL|1|A2|C|1553
8PPL|1|A2|C|1554
8PPL|1|A2|U|1555
8PPL|1|A2|A|1556
8PPL|1|A2|C|1557
8PPL|1|A2|C|1558
*
8PPL|1|A2|G|1577
8PPL|1|A2|U|1578
8PPL|1|A2|A|1579
8PPL|1|A2|A|1580
8PPL|1|A2|C|1581
8PPL|1|A2|C|1582
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AK
- 40S ribosomal protein S10
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
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