IL_8PPL_132

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUUA*U(OMU)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_132 not in the Motif Atlas

Geometric match to IL_5C5W_001

Geometric discrepancy: 0.2151

The information below is about IL_5C5W_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8PPL|1|A2|U|1728
8PPL|1|A2|U|1729
8PPL|1|A2|U|1730
8PPL|1|A2|A|1731
*
8PPL|1|A2|U|1803
8PPL|1|A2|OMU|1804
8PPL|1|A2|G|1805
8PPL|1|A2|A|1806

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8