IL_8PV1_039
3D structure
- PDB id
- 8PV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV1_039 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.5405
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8PV1|1|C1|G|973
8PV1|1|C1|A|974
8PV1|1|C1|G|975
8PV1|1|C1|G|976
8PV1|1|C1|U|977
8PV1|1|C1|A|978
8PV1|1|C1|A|979
*
8PV1|1|C1|U|1035
8PV1|1|C1|A|1036
8PV1|1|C1|A|1037
8PV1|1|C1|A|1038
8PV1|1|C1|U|1039
8PV1|1|C1|A|1040
8PV1|1|C1|U|1041
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CL
- Putative GTP binding protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LS
- 60S ribosomal protein L20
- Chain LT
- 60S ribosomal protein l21-like protein
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