IL_8PV2_036
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8PV2|1|C1|G|890, 8PV2|1|C1|A|902, 8PV2|1|C1|A|903
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV2_036 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0809
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8PV2|1|C1|G|889
8PV2|1|C1|G|890
8PV2|1|C1|G|891
*
8PV2|1|C1|U|901
8PV2|1|C1|A|902
8PV2|1|C1|A|903
8PV2|1|C1|U|904
8PV2|1|C1|C|905
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LN
- Ribosomal protein L15
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lj
- Ribosomal protein L37
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