IL_8PV4_008

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_008 not in the Motif Atlas

Geometric match to IL_6DLR_003

Geometric discrepancy: 0.146

The information below is about IL_6DLR_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8PV4|1|C1|A|155
8PV4|1|C1|G|156
*
8PV4|1|C1|C|253
8PV4|1|C1|U|254
8PV4|1|C1|U|255

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Ce

Ribosome biogenesis protein NOP53

Chain LL

60S ribosomal protein L13

Chain Li

60S ribosomal protein L36