IL_8PV4_062
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_062 not in the Motif Atlas
- Homologous match to IL_8C3A_070
- Geometric discrepancy: 0.2329
- The information below is about IL_8C3A_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15698.1
- Basepair signature
- cWW-tSH-cSH-cWW
- Number of instances in this motif group
- 9
Unit IDs
8PV4|1|C1|G|1598
8PV4|1|C1|A|1599
8PV4|1|C1|U|1600
8PV4|1|C1|G|1601
*
8PV4|1|C1|C|1804
8PV4|1|C1|G|1805
8PV4|1|C1|C|1806
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CJ
- Pescadillo homolog
- Chain Ce
- Ribosome biogenesis protein NOP53
- Chain Lk
- 60S ribosomal protein L38-like protein
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