IL_8PV4_065

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUGC*GGAAUA

Length

11 nucleotides

Bulged bases

8PV4|1|C1|U|1609, 8PV4|1|C1|U|1795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_065 not in the Motif Atlas

Homologous match to IL_5TBW_066

Geometric discrepancy: 0.1593

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8PV4|1|C1|U|1607
8PV4|1|C1|U|1608
8PV4|1|C1|U|1609
8PV4|1|C1|G|1610
8PV4|1|C1|C|1611
*
8PV4|1|C1|G|1791
8PV4|1|C1|G|1792
8PV4|1|C1|A|1793
8PV4|1|C1|A|1794
8PV4|1|C1|U|1795
8PV4|1|C1|A|1796

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CJ

Pescadillo homolog

Chain Ce

Ribosome biogenesis protein NOP53

Chain LZ

60S ribosomal protein L27