IL_8PV4_071

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8PV4|1|C1|G|1731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_071 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0831

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8PV4|1|C1|U|1674
8PV4|1|C1|U|1675
8PV4|1|C1|A|1676
8PV4|1|C1|A|1677
8PV4|1|C1|C|1678
*
8PV4|1|C1|G|1727
8PV4|1|C1|G|1728
8PV4|1|C1|A|1729
8PV4|1|C1|A|1730
8PV4|1|C1|G|1731
8PV4|1|C1|A|1732

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Ce

Ribosome biogenesis protein NOP53

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38-like protein