IL_8PV4_085

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8PV4|1|C1|U|2122, 8PV4|1|C1|U|2138, 8PV4|1|C1|C|2142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_085 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.149

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8PV4|1|C1|C|2119
8PV4|1|C1|G|2120
8PV4|1|C1|A|2121
8PV4|1|C1|U|2122
8PV4|1|C1|G|2123
8PV4|1|C1|G|2124
*
8PV4|1|C1|U|2136
8PV4|1|C1|G|2137
8PV4|1|C1|U|2138
8PV4|1|C1|U|2139
8PV4|1|C1|G|2140
8PV4|1|C1|A|2141
8PV4|1|C1|C|2142
8PV4|1|C1|G|2143

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Lp

60S ribosomal protein L43-like protein