IL_8PV4_106
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UU(OMU)U*AAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_106 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2123
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8PV4|1|C1|U|2681
8PV4|1|C1|U|2682
8PV4|1|C1|OMU|2683
8PV4|1|C1|U|2684
*
8PV4|1|C1|A|2692
8PV4|1|C1|A|2693
8PV4|1|C1|U|2694
8PV4|1|C1|A|2695
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cf
- Ribosome production factor 2 homolog
- Chain Cg
- Ribosome biogenesis regulatory protein
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