IL_8PV4_110

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_110 not in the Motif Atlas

Geometric match to IL_5WLH_001

Geometric discrepancy: 0.135

The information below is about IL_5WLH_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8PV4|1|C1|G|2729
8PV4|1|C1|U|2730
8PV4|1|C1|C|2731
8PV4|1|C1|C|2732
*
8PV4|1|C1|G|2746
8PV4|1|C1|C|2747

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain LL

60S ribosomal protein L13

Chain La

60S ribosomal protein L28-like protein