IL_8PV4_118

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_118 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.3741

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8PV4|1|C1|C|2919
8PV4|1|C1|G|2920
*
8PV4|1|C1|C|2929
8PV4|1|C1|A|2930
8PV4|1|C1|G|2931

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2